The Imaging Computational Microscope is a matlab gui for automated analysis of Calcium and Voltage-Sensitive Dye imaging data. Check out this post for an overview of the main functionality.
Get ICM
1. Download the zip or contribute to the open source project
2. Unzip
3. Navigate to ImagingComputationalMicroscope-develop folder in matlab
4. run install_icm.m in matlab.
5. Check out icm_basics.m
6. Open documentation in browser: doc/index.html
*Need Matlab version 2013a or later. The zip package includes all dependencies: ecc, FastICA_25, GUILayout-v1p13.
Reference
At some point there will be a paper describing ICM, which you can reference if you use the software for analysis. For now just let me know if you use it, especially in a publication.
This is a pre-alpha release of the Imaging Computatoinal Microscope GUI. Please contact me for feature suggestions or bugs.
Copyright (C) 2013 E. Paxon Frady
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
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